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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015930915.1_cds_XP_016477874.1_69553
CDS Infomation

[gene=LOC107799295] [db_xref=GeneID:107799295] [protein=alpha-L-arabinofuranosidase 1-like] [protein_id=XP_016477874.1] [location=join(12927..13103,13441..13495,13957..14168,14527..14648,14759..14906,15415..15484,16102..16247,16376..16421,16530..16582,17247..17391,17563..17681,17791..17862,18104..18207,18525..18581,18671..18869,19484..19630,19736..19885)] [gbkey=CDS]
Sequence

ATGGATTCAAGCCGCTCCCTTTGTTGTATTCTCCTTTTAGTTCTATTTGGAATATCCGTC
CAATACCAATGCTCTGCAAGTGGGATTGATGCAAACGAAACAGCGCTACTGTTAGTAAAT
GCATCTGAAGCATCAGCGAGGAAAATGCCGGATACTCTGTTTGGAATATTCTTTGAGGAG
ATCAATCATGCTGGTGCTGGTGGATTGTGGGCTGAACTTATCAGCAACAGAGGTTTTGAA
TCTGGAGGCCATAATTTTCCATCTAGCATTGAACCTTGGTCTATCATTGGCGATGAGTCT
TCTGTGATCGTATCAACTGAGCTTTCATCATGCTTTGATCGGAATAAAGTTGCACTTCGA
GTACAGGTGCTTTGTGACAGTAAAGGTGCCAAACTCTGTCCAGATGGAGGAGTTGGTGTC
TACAACCCGGGATTCTGGGGCATGAATATTGAACAGGGAAAGAGATACAAACTGGTGTTT
TATGTGCGTTCACAAGAGTCTATTAATTTATCAGTAGGTTTAACCGGTTCAAATGGATTA
AAGAAGCTGGCTACTGTTGTCGTAGTAGCTGCAAATGTATCAAATTGGACAAAGGTGGAG
GTTTTGTTGGAAGCGGAAGGAACAGATCCCAATTCAAGACTCGAACTGAGATCAGCTACA
AAGGGTGTTATATGGTTTGATCAAGTATCATTGATGCCTATGGACACGTACAAGGGGCAT
GGCTTCCGGAAAGACCTTTTTGGAATGCTTAAAGCCTTGAAACCAGCATTCATCAGATTT
CCAGGAGGCTGTTTTGTTGAAGGCGGCTGGTTAAGAAATGCATTCCGGTGGAAAGAAACT
ATTGGACCATGGGAAGAGAGGCCTGGGCATTTAGGTGATGTGTGGAATTACTGGACTGAT
GATGGGCTTGGTCATTTCGAGTTTCTTCAGCTTGCAGAGGATTTGGATGCATTGCCAATC
TGGGTTTTCAACAACGGAATCAGCCACAATGATCAAGTTGACACTTTCCATGTCTTACCT
CTCGTGCAAGAAATCTTAGATGGTCTTGAATTTGCAAGAGGTGGTTCTGACTCAAAATGG
GGTTCGATTCGAGCTGCAATGGGACATCCAGAGCCCTTTGATTTGAGATATGTTGCTATT
GGAAACGAGGATTGTGATAAGACACAGTACCGAGGAAATTACCTCAAGTTCTATTCAGCA
ATCAAAGAAGCCTACCCAGATATTAAGATAATCTCTAACTGTGATGCTTCTGCCAAAGCA
TTGGATCATCCAGCTGATTTATATGATTTTCACATTTATGACAATGCAAGTACTGTGTTC
TCTCTTGCCAACCATTTCGATGACGCACCACGCAATGGACCGAAGGCTTTTATAAGTGAG
TATGCTGTGCACGGAAATGATGCTGGAAAAGGTAGTCTTTTAGCAGCATTGGCTGAAGCT
GGTTTCCTCATTGGGGTAGAAAAGAACAGTGATGCAGTTGAAATGGCAAGCTATGCACCC
CTATTCGCTAATAACAATGACTGGATGTGGAAAGCAGATGCGATTGTTTTCACTTCTTCA
CAGGCATATGGAACCCCTAGTTATTGGATGCAACACCTTTTCAAAGAGTCAAACGGCGCA
ACTCTTCTAAGTTCAACACTTCAAGCTAATTCTTCAGATTCACTAATAGCATCTGCCATA
ACCTGGCGAAATGAGATTGATGACAACGAGTACTTAAGAATAAAGGTTGTGAACTTTGGG
AGCAGCACAGTTGCTCTTAAAATCTCTATCAGTGGATTGGAGCAGAACTCGTTGCAGTCC
TTTGGGGCAACAAAAACTACATTAACATCTACCAATGTGATGGATGAGAATTCTTTTGAA
GATCCTAAGAAGGTGTCACCAGTTGAAACTTTGGTCAAACAAGTTAGCGAGAACATGGAT
GTTGTACTTTCACCGTATTCTTTCACTTCGTTTGATTTGTTAAGAAAATCCATCAGCATT
AGGACAACAACAACTGCTTCTGGCCTTGAATCTTCATTCTAA

Peptide Sequence

PEP ID

XP_016477874.1
PEP Infomation

PREDICTED: alpha-L-arabinofuranosidase 1-like [Nicotiana tabacum]
Sequence

MDSSRSLCCILLLVLFGISVQYQCSASGIDANETALLLVNASEASARKMPDTLFGIFFEE
INHAGAGGLWAELISNRGFESGGHNFPSSIEPWSIIGDESSVIVSTELSSCFDRNKVALR
VQVLCDSKGAKLCPDGGVGVYNPGFWGMNIEQGKRYKLVFYVRSQESINLSVGLTGSNGL
KKLATVVVVAANVSNWTKVEVLLEAEGTDPNSRLELRSATKGVIWFDQVSLMPMDTYKGH
GFRKDLFGMLKALKPAFIRFPGGCFVEGGWLRNAFRWKETIGPWEERPGHLGDVWNYWTD
DGLGHFEFLQLAEDLDALPIWVFNNGISHNDQVDTFHVLPLVQEILDGLEFARGGSDSKW
GSIRAAMGHPEPFDLRYVAIGNEDCDKTQYRGNYLKFYSAIKEAYPDIKIISNCDASAKA
LDHPADLYDFHIYDNASTVFSLANHFDDAPRNGPKAFISEYAVHGNDAGKGSLLAALAEA
GFLIGVEKNSDAVEMASYAPLFANNNDWMWKADAIVFTSSQAYGTPSYWMQHLFKESNGA
TLLSSTLQANSSDSLIASAITWRNEIDDNEYLRIKVVNFGSSTVALKISISGLEQNSLQS
FGATKTTLTSTNVMDENSFEDPKKVSPVETLVKQVSENMDVVLSPYSFTSFDLLRKSISI
RTTTTASGLESSF

Transcript Sequence

Gene sequence data has not been registered.